MS-GF+ Documentation

Contacts

PNNL Proteomics [proteomics@pnnl.gov]
Sangtae Kim [sangtae.kim (at) gmail.com]

Summary

Usage and help

MS-GF+ Usage (ChangeLog)

MS-GF+ Mzid to Tsv output converter

MS-GF+ Suffix Array builder

Training new MS-GF+ scoring models

MS-GFDB (obsolete; differences from MS-GFDB to MS-GF+)

Publications

MS-GF+ makes progress towards a universal database search tool for proteomics.
Kim S, Pevzner PA. Nat Commun. 2014 Oct 31;5:5277. doi: 10.1038/ncomms6277.
PubMed ID 25358478

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases.
Kim S, Gupta N, Pevzner PA. J Proteome Res. 2008 Aug;7(8):3354-63. doi: 10.1021/pr8001244.
PubMed ID 18597511