MS-GF+ Documentation


PNNL Proteomics []
Sangtae Kim [ (at)]


Usage and help

MS-GF+ Usage (ChangeLog)

MS-GF+ Parameter files (aka config files)

MS-GF+ Mzid to Tsv output converter

MS-GF+ Suffix Array builder

Training new MS-GF+ scoring models

MS-GFDB (obsolete; differences from MS-GFDB to MS-GF+)


MS-GF+ makes progress towards a universal database search tool for proteomics.
Sangtae Kim and Pavel A Pevzner. Nat Commun. 2014 Oct 31; 5:5277. doi: 10.1038/ncomms6277.
PubMed ID 25358478

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases.
Sangtae Kim, Nitin Gupta, and Pavel A Pevzner. J Proteome Res. 2008 Aug; 7(8):3354-63. doi: 10.1021/pr8001244.
PubMed ID 18597511