# This file specifies additional enzymes considered for MS-GF+
#
# To be loaded, this file must reside in a directory named params below the working directory
# For example, create file C:\Work\params\enzymes.txt when the working directory is C:\Work
# Or, on Linux, create file /home/user/work/params/enzymes.txt when the working directory is /home/user/work/
#
# Format: ShortName,CleaveAt,Terminus,Description
# - ShortName: A unique short name of the enzyme (e.g. Tryp). No space is allowed.
# - CleaveAt: The residues cleaved by the enzyme (e.g. KR). Put "null" in case of no specificity.
# - Terminus: Whether the enzyme cleaves C-terminal (C) or N-terminal (N)
# - Description: Description of the enzyme
#
# The following enzymes are pre-configured, numbered 1 through 9 when using the -e argument at the command line
# Tryp,KR,C,Trypsin                         # 1
# Chymotrypsin,FYWL,C,Chymotrypsin          # 2
# LysC,K,C,Lys-C                            # 3
# LysN,K,N,Lys-N                            # 4
# GluC,E,C,Glu-C                            # 5: glutamyl endopeptidase
# ArgC,R,C,Arg-C                            # 6
# AspN,D,N,Asp-N                            # 7
# aLP,null,C,alphaLP                        # 8
# NoCleavage,null,C,no cleavage             # 9: Endogenous peptides
#
# If you want to redefine a pre-configured enzyme (e.g. change CleaveAt of Asp-N to "DE"), specify the enzyme again.
# Specify one enzyme per line.
# New enzymes will continue the numbering at 10
#
# Examples:
# CNBr,M,C,CNBr
# AspN,DE,N,Asp-N
# GluC,DE,C,Glu-C